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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015846192.1_cds_XP_016509541.1_22464
CDS Infomation

[gene=LOC107827004] [db_xref=GeneID:107827004] [protein=ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like] [protein_id=XP_016509541.1] [location=complement(join(41062..41403,41508..41748,41996..42309,42402..42942,43451..44037))] [gbkey=CDS]
Sequence

ATGAAAATGTCTCCTGCCCTTTCTTTGTTTGTCACTCAATTTCCCCTATGCAAATCCCAA
GATTTTTCTAAGGATACTCACAATCCTAAAATCTCCAATAAAGAAACCCCATGTCAAAAA
TCATATTCAGACGCCAGAATAAACAGGAGGAAGCTGTTGGGTACTAGTGGTTTGAGCCTT
GTAGCAGGGACTTTGGCTAAACCAGCAAGAGCAGAAACTGAAGCACCAATTGAAGCAACA
TCAAGTAGAATGTCATATTCAAGATTCTTGGAATACTTGAATCAAGGTGCTGTGAAAAAA
GTTGATTTCTTTGAGAATAGTGCTGTTGCTGAGATATTCAATCCTGCTCTTAACAAAGTC
CAGAGAGTTAAAGTTCAGTTGCCAGGATTGCCACCAGAATTGGTGAGAAAACTTAGAGAG
AAGGATGTAGATTTTGCTGCTCATCTCCCTGAAATGAATGTCATAGGACCACTTCTTGAT
TTACTTGGGAATTTAGCTTTTCCATTGATATTGCTTGGCTCTTTGCTGTTGAGAAGCTCT
TCTTCAAATACCCCTGGTGGGCCAAACTTGCCTTTTGGATTAGGAAGGAGCAAAGCCAAA
TTCCAGATGGAACCAAATACAGGAGTAACATTTGATGATGTGGCTGGAGTAGATGATGCA
AAGCAAGATTTTCAAGAGATTGTTGAGTTCTTGAAAACCCCAGAAAAGTTTGCTGCAGTT
GGGGCAAAGATACCAAAGGGAGTTCTCTTAGTAGGGCCACCAGGGACAGGGAAGACATTG
CTAGCTAAGGCGATCGCCGGAGAAGCAGAGGTTCCGTTCTTATCTCTCTCTGGTTCAGAG
TTCGTTGAGATGTTTGTTGGTGTGGGAGCTTCTAGAGTTAGGGACTTATTCAACAAGGCA
AAGCAAAATTCACCTTGTTTAGTCTTTATTGATGAGATTGATGCTGTTGGGAGGCAAAGA
GGAACTGGTATTGGTGGTGGAAATGATGAAAGAGAGCAGACACTTAACCAACTTCTCACT
GAAATGGATGGTTTTACTGGAAACACTGGAGTCATTGTCATTGCTGCTACTAATAGGCCT
GAAATTCTTGATCAAGCTTTGCTTCGACCTGGAAGATTTGATAGGCAGGTAAGTGTTGGA
CTGCCTGATATAAGAGGAAGGGAAGAAATATTGAAGGTTCATAGTAACAATAAGAAGCTT
GATAAAGATGTATCTTTAAGTGTTATTGCAATGAGAACACCAGGATTCAGTGGTGCAGAT
CTTGCAAACCTCATGAATGAAGCTGCCATTCTAGCTGGAAGAAGAGGAAAAGATAAGATT
ACCTCGAAAGAGATTGATGATTCCATCGATAGAATTGTTGCTGGAATGGAAGGAACCAAG
ATGACAGATGGAAAGAATAAGATTTTGGTAGCATATCATGAAGTTGGACATGGTGTCTGC
GCGACATTGACTCCTGGTCATGATGCAGTACAGAAAGTTACATTGATCCCAAGAGGGCAA
GCTCGCGGTCTTACATGGTTTATTCCTGGTGAAGATCCGACCTTGATCTCTAAGCAGCAA
CTTTTTGCTAGAATAGTTGGAGGCTTAGGAGGTAGAGCAGCAGAGGAAATAATTTTTGGG
GAAGCAGAAATCACTACTGGTGCAGCTGGAGACTTGCAACAAATAACTCAAATAGCAAGA
CAAATGGTGACAATGTTCGGGATGTCTGAGATAGGACCATGGGCGTTAACTGATCCTGCA
ACACAAAGTGGTGACTTGGTGCTGAGAATGCTGGCGAGGAATCAAATGTCAGAGAAACTA
GCAGAAGACATTGATGCAGCTGTAAGGCACATAATTGAGAGAGCATATGAAGTTGCAAAG
AACCACATAAGGAACAGCAGGGAGGCAATCGACAAATTAGTGGACGTGCTGCTAGAAAAG
GAGACTCTTACAGGAGATGAGTTCAGAGCTATACTCTCTGAATTCACTAATATCCCATCG
GCTAACATAAACAGTAAACCTATTAGAGAACTGATTGAGGCCTAA

Peptide Sequence

PEP ID

XP_016509541.1
PEP Infomation

PREDICTED: ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like [Nicotiana tabacum]
Sequence

MKMSPALSLFVTQFPLCKSQDFSKDTHNPKISNKETPCQKSYSDARINRRKLLGTSGLSL
VAGTLAKPARAETEAPIEATSSRMSYSRFLEYLNQGAVKKVDFFENSAVAEIFNPALNKV
QRVKVQLPGLPPELVRKLREKDVDFAAHLPEMNVIGPLLDLLGNLAFPLILLGSLLLRSS
SSNTPGGPNLPFGLGRSKAKFQMEPNTGVTFDDVAGVDDAKQDFQEIVEFLKTPEKFAAV
GAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFLSLSGSEFVEMFVGVGASRVRDLFNKA
KQNSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNTGVIVIAATNRP
EILDQALLRPGRFDRQVSVGLPDIRGREEILKVHSNNKKLDKDVSLSVIAMRTPGFSGAD
LANLMNEAAILAGRRGKDKITSKEIDDSIDRIVAGMEGTKMTDGKNKILVAYHEVGHGVC
ATLTPGHDAVQKVTLIPRGQARGLTWFIPGEDPTLISKQQLFARIVGGLGGRAAEEIIFG
EAEITTGAAGDLQQITQIARQMVTMFGMSEIGPWALTDPATQSGDLVLRMLARNQMSEKL
AEDIDAAVRHIIERAYEVAKNHIRNSREAIDKLVDVLLEKETLTGDEFRAILSEFTNIPS
ANINSKPIRELIEA

Transcript Sequence

Gene sequence data has not been registered.